AT2G25640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPOC domain / Transcription elongation factor S-II protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 1179 Blast hits to 1045 proteins in 235 species: Archae - 0; Bacteria - 202; Metazoa - 503; Fungi - 239; Plants - 160; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10910836..10913908 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81201.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 745 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNNLLPQPC MQMGQFINVP TPTPELISNP EMRLSQPICS HISGGRQDFH VMLPSVVGLG SVNMDKTLLP GKRKSPLHPS VQNKRMALPM EGRPWASAPM 101: PVQLSSVSPR TQYLPASFVS KNSFVSFSKP GKQAAARKPT LQKPMLLKPQ SESSGSVRSK MRESLAGALA MVQCQMDVPN ESKMLDSETV ANPLEGHVSG 201: PVSAASGVDV MVSNGSTEML TLSDPSPVAG ISVQTVLPEI LSIAKTSDAQ VPEAVKPFVQ DNVSYSDNVF SKDDLLQGND LSWALESDIE FTVNCQNEMI 301: GAMANDGSLE KLLLDPQVLA FEIETELFKL FGGVNKKYKE KGRSLLFNLK DKSNPKLREK VMYGEIAAER LCSMSAEELA SKELAEWRQA KAEEMAQMVV 401: LQDTEVDIRS LVRKTHKGEF QVEVEPMDSG SVEVSVGMSS INWSRTKNFK KKTPSITKTL GVKNELNSSN ESTGPINGVT IDDEMQAATG SLPPIVSLDE 501: FMSSIDSESP SGFLSSDTEK KPSVSDNNDV EEVLVSSPKE SANIDLCTSP VKAEALSPLT AKASSPVNAE DADIVSSKPS SDLKSKTTSV FIPDGERLWE 601: GVLQLSPSTV SSVIGILRSG EKTTTKEWPI LLEIKGRVRL DAFEKFVREL PNSRSRAVMV MCFVCKEECS KTEQENISEV VDSYAKDGRV GYAEPASGVE 701: LYLCPTRGRT VEILNKIVPR NQLDFLKSIN DDGLIGVVVW RRHTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)