AT2G25480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 cytosol 0.000 ASURE: cytoskeleton,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.2); Has 2143 Blast hits to 1757 proteins in 233 species: Archae - 0; Bacteria - 125; Metazoa - 980; Fungi - 165; Plants - 356; Viruses - 3; Other Eukaryotes - 514 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10843449..10845343 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44345.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSESVVAAD GADCAIANGE VTMEGDSSNG NGGTSENLEC CSTQHPMEAS EGTQNEQVDD SKQMRGQKVQ GRVKHEKTSG GKNIPSVLVK KKKDGKVVAS 101: NGSVAPNVKP VKSPKSKSLN GREAHVTKHG NHDSLPAEGT RDKPKLRETR KQVNDTSEDD TQYPKEDDGK PRRASALPNY GFSFRCDQRA EKRREFYSKL 201: EEKIHAKEEE KNTVQAKSKE TQEAELKMLR KSLNFKATPM PTFYQEPQLP KTELKKIAIT RPKSPKLGRK KTNSRADSEE AITIQTPRFG RLSLDEKTPK 301: DNPVVEGSVP GETKKPPVRK SLPRLPSEKT NLSNGKVAPA KAVTASTKAK SERKKPDKDV DDLSQSSPVD DNADPEDSQE QAPRVNEDRN ESHMVVEVVA 401: VEP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)