AT2G25470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.427 nucleus 0.345 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 21 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 21 (RLP21); INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 14 (TAIR:AT1G74180.1); Has 123339 Blast hits to 32686 proteins in 1192 species: Archae - 50; Bacteria - 9219; Metazoa - 30627; Fungi - 1506; Plants - 72809; Viruses - 37; Other Eukaryotes - 9091 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10838420..10841881 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104517.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 935 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLLGQLHGC TSCIEKEREA LLELKKYLMS RSRESGLDYV LPTWTNDTKS DCCQWDGIKC NRTSGRVIEL SVGDMYFKES SPLNLSLLHP FEEVRSLNLS 101: TEGYNEFNGF FDDVEGYRSL SGLRNLKIMD LSTNYFNYST FPFLNAATSL TTLILTYNEM DGPFPIKGLK DLTNLELLDL RANKLNGSMQ ELIHLKKLKA 201: LDLSSNKFSS SMELQELQNL INLEVLGLAQ NHVDGPIPIE VFCKLKNLRD LDLKGNHFVG QIPLCLGSLK KLRVLDLSSN QLSGDLPSSF SSLESLEYLS 301: LSDNNFDGSF SLNPLTNLTN LKFVVVLRFC SLEKIPSFLL YQKKLRLVDL SSNNLSGNIP TWLLTNNPEL EVLQLQNNSF TIFPIPTMVH NLQIFDFSAN 401: NIGKFPDKMD HALPNLVRLN GSNNGFQGYF PTSIGEMKNI SFLDLSYNNF SGKLPRSFVT GCVSIMFLKL SHNKFSGRFL PRETNFPSLD VLRMDNNLFT 501: GNIGGGLSNS TMLRILDMSN NGLSGAIPRW LFEFPYLDYV LISNNFLEGT IPPSLLGMPF LSFLDLSGNQ FSGALPSHVD SELGIYMFLH NNNFTGPIPD 601: TLLKSVQILD LRNNKLSGSI PQFDDTQSIN ILLLKGNNLT GSIPRELCDL SNVRLLDLSD NKLNGVIPSC LSNLSFGRLQ EDAMALNIPP SFLQTSLEME 701: LYKSTFLVDK IEVDRSTYQE TEIKFAAKQR YDSYSGRSEF SEGILRLMYG MDLSNNELSG VIPTELGDLL KLRTLNLSHN SLLGSIPSSF SKLIDVESLD 801: LSHNMLQGSI PQLLSSLTSL AVFDVSSNNL SGIIPQGRQF NTFEEESYLG NPLLCGPPTS RSCETNKSPE EADNGQEEED DKAAIDMMVF YFSTASIYVT 901: ALIGVLVLMC FDCPWRRAWL RIVDAFIASA KHVLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)