AT2G25440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 20 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 20 (RLP20); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 24 (TAIR:AT2G33020.1); Has 67847 Blast hits to 21797 proteins in 926 species: Archae - 19; Bacteria - 3141; Metazoa - 10913; Fungi - 651; Plants - 48566; Viruses - 4; Other Eukaryotes - 4553 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10826735..10829402 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75191.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTMSKSSLR LHFLSLLLLC CVSPSSFVII RFITHNHFDG LVRCHPHKFQ ALTQFKNEFD TRRCNHSNYF NGIWCDNSKV RSQSYDYGTV SVELSNQTVA 101: SSSFIIFATL ISLTTTSPPL PSLPSLFPTL RNLTKLTVLD LSHNHFSGTL KPNNSLFELH HLRYLNLEVN NFSSSLPSEF GYLNNLQHCG LKEFPNIFKT 201: LKKMEAIDVS NNRINGKIPE WLWSLPLLHL VNILNNSFDG FEGSTEVLVN SSVRILLLES NNFEGALPSL PHSINAFSAG HNNFTGEIPL SICTRTSLGV 301: LDLNYNNLIG PVSQCLSNVT FVNLRKNNLE GTIPETFIVG SSIRTLDVGY NRLTGKLPRS LLNCSSLEFL SVDNNRIKDT FPFWLKALPK LQVLTLSSNK 401: FYGPISPPHQ GPLGFPELRI LEISDNKFTG SLSSRYFENW KASSAMMNEY VGLYMVYEKN PYGVVVYTFL DRIDLKYKGL NMEQARVLTS YSAIDFSRNL 501: LEGNIPESIG LLKALIALNL SNNAFTGHIP QSLANLKELQ SLDMSRNQLS GTIPNGLKQL SFLAYISVSH NQLKGEIPQG TQITGQLKSS FEGNVGLCGL 601: PLEERCFDNS ASPTQHHKQD EEEEEEQVLH WKAVAMGYGP GLLVGFAIAY VIASYKPEWL TKIIGPNKRR N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)