AT2G25370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.925 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10806700..10809794 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69454.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.62 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERHDQELRY QKRRLRPCSF PCRWIQRQRP ATSDSNQRQQ PATATSDNIH CSFVCRWTQR PITATIANNC RCVRLIAKNF SDQKLRSLIA GDYRYFWSLN 101: QRQANEQLLV VVAGFSRQRQ ANEQGLNSII TGDIPNSKGE GSSPAAKFMD NVVYRLCFKG LVNYEAVADD VEKAVKAGFG VAICDEKDNL LHEIKESLRD 201: IEISRRGVEI MALVRGLSES FDLGMRNVVI YCDDDWIYQS IIGRGKSKKK IDHLVEEVQG ILEKMACIDA VLVARNDVKF AFRLAREAIG RNSVDVNAEQ 301: GETCGIFFEE TDVEHMFVTE KCLHRHCFPC VKQHVKVKLR SGTEPTCLEY GCKFKLTLER CSKVLTLKLI EMWKQKMKED SIPAAERIYC PYPNCSMLMS 401: KTELSSEADL SNVRTCVKCC GLFCIDCKVP SHTDLSYDDY KKLHPDPLVD DLKLKSLAND KMWRQCVKCR HMIELSHGCN HMTCRCGYEF CYECGIEWQK 501: RDKVIMMMKI AMMTTQNMIV KRICASAIMM KMVVVGMILK IFYDAPRDDQ DVVYKYPSPE QFFSEERNAD GDDYIWDDYN NYGGLTGDKG GFDEGFFRDY 601: YSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)