AT2G25330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.514 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25320.1); Has 1667 Blast hits to 814 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 112; Plants - 1267; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10788946..10791331 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78072.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 693 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSSSSSAAD QSHPSISSEK PLSSSRDESG GAQEIVAVDR PGEYTALCRW TVESFTRVKA KALWSKYFDV GGYDCRLLVY PRGDSQALPG SISIYLQIID 101: PRGTSSSLWD CFASYQLSII NHVDDSLTIR KNSWHRFSNK KRSHGWCDFT LNSSVLDPKM GFLFNNDSLL ITADIMILNE SVSFSIDNNN ESVVGSMTDV 201: LSGTFTWTVE NFSMFKEMIK TQKITSPVFV AGECFLRIGV YQSVVNAQEY FSMCLDSTDT EKSVLSDKSS WCLFSMSALN QKHGCTNMNK ESYGRFAADN 301: KSGDNTGLGW NDYMKMSDFV NPDAGYLLDD KAVFSTSFDV IKEFSSFTKN GTGNGYMGKF SWRIENFTSL VDLLEKRKIT GLYIKSKRFQ IGNRDCRLIV 401: YPRGQSQPPS HLSIFLEVTD SRSSSSDWSC FVSHRLSVVN QRSEEKSVTK ESQNRFSKAE KDWGWREFVT LTSLFDQDSG FLVQDSVVFS VEVLMLKETS 501: LTKDYTEAES ASSVSQIDKT VKSSFTWKVE NFLAFKGIME KRKIFSKFFQ AGGCELRIGV YESFDTICIY LESGQSAGND VDNNLWVKYK MGILNQKNPA 601: KSVWKESSLC TKTWNNSVLL FMKVSDMLEA DAGFLVRDTL VFVCEILDCC PWFEFSDLEV LASDDVQDAL TTNPDEVIGS EKSEEDTFRQ VSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)