AT2G24710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.545 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate receptor 2.3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glutamate receptor 2.3 (GLR2.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.2 (TAIR:AT2G24720.1); Has 5318 Blast hits to 5220 proteins in 711 species: Archae - 48; Bacteria - 1305; Metazoa - 3164; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10516880..10520549 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100814.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTEKLFFCI LLVFFFCLEF NRGQNNGKTL VDVGVVTDVD TSHSKVVMLC INMSISDFYS SNPQFETRLV VNVGDSKSDV VGAAIAALDL IKNKQVKAIL 101: GPWTSMQAHF LIEIGQKSRV PIVSYSATSP ILTSLRSPYF LRATYEDSFQ VQPIKAIIKL FGWREVVPVY IDNTFGEGIM PRLTDALQDI NVRIPYRSVI 201: AINATDHEIS VELLKMMNMP TRVFLVHMYY DLASRFFIKA KELGLMEPGY VWILTNGVID DLSLINETAV EAMEGVLGIK TYIPKSPDLE KFRSRWRSLF 301: PRVELSVYGL WAYDATTALA VAIEEAGTNN MTFSKVVDTG RNVSELEALG LSQFGPKLLQ TLLTVQFRGL AGEFRFFRGQ LQPSVFEIVN IINTGEKSIG 401: FWKEGNGLVK KLDQQASSIS ALSTWKDHLK HIVWPGEADS VPKGWQIPTK GKKLRIGVPK RTGYTDLVKV TRDPITNSTV VTGFCIDFFE AVIRELPYDV 501: SYEFIPFEKP DGKTAGNYND LVYQVYLGRY DAVVGDTTIL VNRSSYVDFT FPFIKSGVGL IVEMTDPVKR DYILFMKPLS WKLWLTSFIS FFLVGCTVWV 601: LEYKRNPDFS GPPRFQASTI CWFAFSTMVF APRERVFSFW ARALVIAWYF LVLVLTQSYT ASLASLLTSQ KLNPTITSMS SLLEKGETVG YQRTSFILGK 701: LKERGFPQSS LVPFDTAEEC DELLSKGPKK GGVSGAFLEI PYLRLFLGQF CNTYKMVEEP FNVDGFGFVF PIGSPLVADV SRAILKVAES PKAMELERAW 801: FKKKEQSCPD PITNPDPNPS FTSRQLDIDS FLFLFVGVLL VCVMALGNFT YCFLAKDQVS YLDKVEMSPC SSSQQMPVKR KTQLNMSQVH DQDSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)