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AT2G24625.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Defensin-like (DEFL) family protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT2G24615.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AC006954EMBL:CP002685EnsemblPlants:AT2G24625EnsemblPlants:AT2G24625.1
entrez:3768322GeneID:3768322GO:GO:0005576GO:GO:0031640
GO:GO:0050832Gramene:AT2G24625.1HOGENOM:HOG000129998KEGG:ath:AT2G24625
PaxDb:Q2V460Pfam:Q2V460PhylomeDB:Q2V460PRIDE:Q2V460
PRO:PR:Q2V460Proteomes:UP000006548RefSeq:NP_001031410.1TAIR:AT2G24625
TMHMM:TMhelixUniGene:At.63218UniProt:Q2V460
Coordinates (TAIR10) chr2:+:10468340..10469286
Molecular Weight (calculated) 10139.50 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.11
Length 88 amino acids
Sequence (TAIR10)
(BLAST)
1: MHSKLRVVYV LLILFILFIR HATTTYCEKV RSKTAPRDVC KKSNGNALCK KTCWTIEKYV NGKCLILPKT TNLDCYCYHY DNGSACRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)