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AT2G24390.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AIG2-like (avirulence induced gene) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AIG2-like (avirulence induced gene) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT4G31310.1); Has 251 Blast hits to 251 proteins in 77 species: Archae - 22; Bacteria - 48; Metazoa - 0; Fungi - 44; Plants - 104; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXBIeggNOG:ENOG410XV5JEMBL:CP002685EnsemblPlants:AT2G24390
EnsemblPlants:AT2G24390.2entrez:816974ExpressionAtlas:F4IPN4Gene3D:3.10.490.10
GeneID:816974Gramene:AT2G24390.2hmmpanther:PTHR31544hmmpanther:PTHR31544:SF3
InterPro:IPR009288InterPro:IPR013024KEGG:ath:AT2G24390PaxDb:F4IPN4
Pfam:PF06094PRIDE:F4IPN4ProteinModelPortal:F4IPN4Proteomes:UP000006548
RefSeq:NP_001077953.1SMR:F4IPN4STRING:3702.AT2G24390.1SUPFAM:SSF110857
TAIR:AT2G24390UniGene:At.39167UniProt:F4IPN4
Coordinates (TAIR10) chr2:+:10373796..10374654
Molecular Weight (calculated) 17157.40 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.31
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGTVTMHSV FVYGSLMADD VVRLLLNRIP QTASATLPDL FSIKGRVYPA IIPAKSDKVS GKVLFGITDD ELNVLDEFED VEYERENVQV LLTDSSDEKL
101: QTKTYVWAKK DDPDLYGTWD FEEWKQLHME GFLKMTKEFA EELNLPKSEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)