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AT2G24080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27540.1); Has 263 Blast hits to 254 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC005170EMBL:CP002685EnsemblPlants:AT2G24080EnsemblPlants:AT2G24080.1
entrez:816942GeneID:816942Gramene:AT2G24080.1hmmpanther:PTHR20995
hmmpanther:PTHR20995:SF21HOGENOM:HOG000065924InterPro:IPR005174KEGG:ath:AT2G24080
OMA:ICVYNIAPfam:PF03478PhylomeDB:O82236PIR:D84632
Proteomes:UP000006548RefSeq:NP_179986.1TAIR:AT2G24080UniGene:At.66239
UniProt:O82236
Coordinates (TAIR10) chr2:-:10237604..10238779
Molecular Weight (calculated) 42267.30 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.27
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGLDDRPAS VAEVGNSKRS GSPKYNERAK TPRLDPKLGS PLLLLSPEEG GFRLYKPDED KFYETKSDFS GYRFLASSGK WFLVVDSRWD LYIIDVFSDE
101: RISLPPLEST QGGLYMVERE GSNDFKVTLI GGSLKDDKNG DFVVVWQFEQ GQFLGFCKKG DLHYRDIPIR VDVRREFRGL QDVVLKGYNL YILVNRSFIR
201: HIDLSGQDGF KNVSETPRFP ISVSAFGRDL GISEIKKVIS FSDSIAVTTS GDVLLVFTTA FESLGERSRI FHVYKRDPEK ELKGNICGTS LVEVESIGDE
301: ALFFDFGITV PADHTLGIEP NCIYFTRNDR FGHKDGSIPC LVDICVYNIA TRTFKRFPSL SNLKLKDAMW FLPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)