suba logo
AT2G23660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : LOB domain-containing protein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 10 (LBD10); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:2249eggNOG:ENOG410JTTFeggNOG:ENOG41107IXEMBL:AB473835
EMBL:AC003040EMBL:AC004482EMBL:CP002685EnsemblPlants:AT2G23660
EnsemblPlants:AT2G23660.1EnsemblPlants:AT2G23660.2entrez:816897GeneID:816897
Genevisible:O64836Gramene:AT2G23660.1Gramene:AT2G23660.2hmmpanther:PTHR31301
hmmpanther:PTHR31301:SF5HOGENOM:HOG000074324InParanoid:O64836InterPro:IPR004883
InterPro:IPR017414KEGG:ath:AT2G23660ncoils:CoilOMA:MASTPCA
PaxDb:O64836Pfam:O64836Pfam:PF03195Pfscan:PS50891
PhylomeDB:O64836PIR:T01154PIRSF:PIRSF038155PRO:PR:O64836
PROSITE:PS50891Proteomes:UP000006548RefSeq:NP_001154530.1RefSeq:NP_179946.1
TAIR:AT2G23660tair10-symbols:LBD10UniGene:At.66237UniProt:O64836
Coordinates (TAIR10) chr2:-:10060242..10061177
Molecular Weight (calculated) 34782.20 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.59
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)