AT2G23100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.878 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9837564..9839699 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81330.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 711 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKLAASLSN CKQTQTHMAS LRKKLPLNRF RRRLDKLRSR HNIRSVRQRF GNGGNTQQQR PPTKHLCPFS DPVEPHKLQR RRLLSQSQLS ECFGCKGKHL 101: EGKRYYYFCP LCNLEFHRGC HVLPQQMKHP LHLSHPLTLI SLDPNFDTSK IPQEWGESSS SDSEGSFDSD DEFGGRRRLL RRRARFFSPF FDVEDDDDDD 201: VDLDDDDDDD DDDDNDLSDI YYGKCKCCQK RFEDIYYHCS VCNFSLNFTC TIKPPPLTIT HLKSHSHILT LFPRRIPLPC DVCGLSLNDA HDPVYACLPC 301: NYMVHRACIN LPRVIKITRH QHRLSLISSL ISGDFSCGVC RKTIDISYGH YSCIKGCCYG AHSKCATNKN VWDGKDLEDV PEEPEEVIEP FVRIDEETIH 401: HFTHSCHLKL QGKGSHRGEK KFCKACCFPI SIYDTFYTCL DCDFVLHEAC ACLPRIQHHP LHKHPLILNK SDPSLQLYVD GYSVEGMFAC SACRRHSTGF 501: VYSCNVEFCD FQVDVKCAFL PDTSVHESHP NHPIYINLTK GACMGCSNAC SRKYLECLIC DSFLGVECAT LPSVAHYKHD SHPLTLCYGE KGTTSGQYWC 601: EICESKLDAS EWFYTCDSCR VTLHLKCLLG NDMYIKPQHF VGKEGEIEIA LNDGNTRPFC SVCHVRCTDI SVFKYQDNVY CDLGCVRKVK IYESRGSELF 701: SSQTAQLKSL K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)