AT2G22600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G51580.1); Has 2093 Blast hits to 1434 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 1296; Fungi - 118; Plants - 634; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9596617..9599050 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67758.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 632 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED 101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK 201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR 301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH 401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA 501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK 601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)