AT2G22540.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : K-box region and MADS-box transcription factor family protein | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter. | ||||||||||||
| Computational Description (TAIR10) |
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7281 Blast hits to 7260 proteins in 901 species: Archae - 3; Bacteria - 13; Metazoa - 824; Fungi - 296; Plants - 6010; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9580417..9583603 | ||||||||||||
| Molecular Weight (calculated) | 26372.30 Da | ||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||
| Length | 235 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDMKEV LERHNLQSKN LEKLDQPSLE LQLVENSDHA RMSKEIADKS 101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE 201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)