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AT2G21840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G21850.1); Has 2782 Blast hits to 662 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 2730; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBNCeggNOG:ENOG411164YEMBL:AK229095EMBL:CP002685
EnsemblPlants:AT2G21840EnsemblPlants:AT2G21840.1entrez:816720GeneID:816720
GO:GO:0005622GO:GO:0008270GO:GO:0035556GO:GO:0047134
Gramene:AT2G21840.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000120689
InterPro:IPR001965InterPro:IPR002219InterPro:IPR004146InterPro:IPR019786
KEGG:ath:AT2G21840OMA:GSHECELPfam:PF03107Pfam:PF07649
Pfscan:PS50081PhylomeDB:Q0WPH4PROSITE:PS01359PROSITE:PS50081
Proteomes:UP000006548RefSeq:NP_179775.2scanprosite:PS01359SMART:SM00109
SMART:SM00249SMR:Q0WPH4SUPFAM:SSF57889TAIR:AT2G21840
UniGene:At.39517UniProt:Q0WPH4
Coordinates (TAIR10) chr2:-:9307388..9310042
Molecular Weight (calculated) 88953.30 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.32
Length 769 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKLQHGSHE CELTSRGIVA NGICNICFKD EPVEFACDPC NFDLCKACSD LPQKMSHHLH PEHPLEFRIG EDDQKTKHMV CVVCGNMSSG AKYYYECSKC
101: EIYLDLGCAL QKNIATSWEA KEMLHYSHEH LLKRCRPGPD SKDSCLLCEQ PLSFTAICYG CVHCYLFFHE RCLDLPTEIQ HPVHPMHPLK RLNYIQTFDG
201: EKSCNACHGQ FVGVPFGCLG CGFYLHLRCA DALLRGLLYK SHEHRLFYVE STRRVADERV KQPCLICKET VVYDRFYYLC VECDLKCHTK CLEIPEYVIK
301: KSYHIHKLRF IRVGGEDDFL EYCGVCETMV ISRYPEYSCE ECDFVGHTEC ILREEVPSPM YLKDLYSCSK GNTKSQHLET IEFEDRLLVN SFSHIHVMKL
401: IHMSELEEEG KCNMCGTKIH DNPCKCETCS FQSHDFCAEL GRPSKHQFHL NHSLTLLPNT PRWFRRKCES CKDDIGGFNL FCRICNFIID INCALKDKKM
501: HGALQRGQKI IGTWLGLCIQ DKHSLFQVIV SRSYPITCSI CDEKFCGKAF SCVTCEDIYH PMCIQVGRRI LVGHPLHVDH MLAISLKSGS KCTACQLNIT
601: KYGYHCTICE INFHIECIKA VIVPRKIKSH SHYFYNFWNN DSRVTRACGV CSRPCGVSFY GCIDCMFNAH VECIGFPANV RNQRHVHTLT QVYTSHREKW
701: SVRDNYMDRI SYKCYPCDRN FPTERIMSKD DRRETTEEKQ QKDIYLMHLE RDLIDLLVRT DDDACGQSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)