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AT2G21690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 (TAIR:AT4G39260.3); Has 13227 Blast hits to 11015 proteins in 679 species: Archae - 0; Bacteria - 817; Metazoa - 7294; Fungi - 1297; Plants - 2835; Viruses - 0; Other Eukaryotes - 984 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC007019EMBL:AC007119
EMBL:CP002685EnsemblPlants:AT2G21690EnsemblPlants:AT2G21690.1entrez:816707
Gene3D:3.30.70.330GeneID:816707GO:GO:0000166GO:GO:0003676
Gramene:AT2G21690.1hmmpanther:PTHR24012HOGENOM:HOG000276232InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT2G21690OMA:RSKCVNVPfam:PF00076
Pfscan:PS50102PhylomeDB:Q9SJ28PIR:B84604PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_179762.1SMART:SM00360SMR:Q9SJ28
STRING:3702.AT2G21690.1SUPFAM:SSF54928TAIR:AT2G21690UniGene:At.52858
UniProt:Q9SJ28
Coordinates (TAIR10) chr2:-:9270114..9270597
Molecular Weight (calculated) 13457.10 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.49
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNVEYTCF VRGLDQDTDE KDLTDIFSKF GNVIDSKIIY DRDTGKSRRF GFVTFEEEKS MTDAIMIMDV EESRSKCVNV GSITVEVARQ RRKNRSAEFA
101: LELVRLINEK QKKMAGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)