AT2G21450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chromatin remodeling 34 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
chromatin remodeling 34 (CHR34); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT2G16390.1); Has 13841 Blast hits to 12186 proteins in 1498 species: Archae - 60; Bacteria - 3626; Metazoa - 3317; Fungi - 3335; Plants - 1269; Viruses - 195; Other Eukaryotes - 2039 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9179622..9182356 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93302.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 816 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFTAWNLRSR SRSITQEELA KRPDPFCLPN LLDGLEDGLY GRLADDVKRL CKLRQEYLNG SISLEDIEAR QDNKRAKSSH NLIIDSDDEL PQESVTQINP 101: LEKRLKKLKE VIVVKNGDSS GSDSSPQGYD EEDSSRNSTD IDNQSLYVDA EEEEELWRKM AFAQESIKVT VEDSQSNDHK QIEDCDHSFI CKDDIGEVCR 201: VCGLIKKPIE SMIEVVFNKQ KRSRRTYMRE KENGETSRDF SGIQSSHTNI LGEKMFIHPW HDQEMRPHQT EGFRFLCNNL AADEPGGCIL AHAPGSGKTF 301: LLISFLQSFM AMDPQARPLV VLPKGIIESW KREFTLWEVE KIPLLDFYSV KAESRKQQLK VLGQWIKERS ILFLGYQQFT RIICDDNFEA ASEDCKLILL 401: EKPTLLILDE GHTSRNKETY MLSSLARVKT RRKVVLTGTL FQNNVEEVFN ILDLVRPKFL KRPGTREIVS RIMSKAEIPR GKQVNQSSSS IEGTFFAAVE 501: LTLQRSTNFS AKASLIKDLR EMTRNILHYH KADFSGLLPG LSEFTVMLNL SSIQRDEVKG LRKMELFKQI SLGAALYIHP KLKSFLEENP SNGEKGFSDN 601: NTTVMKLDKM LKKINVRDGV KMKFFLNLLA LCESTGEKLL VFSQYIVPIK TLERLMSSMK GWRLGKEMFT ITGDSSNEQR EWSMERFNNS LEAKVFFGSI 701: KACGEGISLV GASRVLILDV HLNPSVTQQA VARAYRPGQK RKVYAYKLVA ADSPEEENYE TCTRKEMMSK MWFEWNVGSG REDFGFRAID ADHSGDAFLE 801: TTKMKEDIKC LYTKVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)