AT2G21340.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7873 Blast hits to 7863 proteins in 1757 species: Archae - 156; Bacteria - 6520; Metazoa - 33; Fungi - 48; Plants - 395; Viruses - 0; Other Eukaryotes - 721 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9132629..9136236 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59684.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||
| Length | 556 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQIQCKTLTF TVSSIPCNPK LPFPSSLTLR SWNPSFPSFR SSAVSGPKSS LKLNRFLRNC ASTNQELVVD GETGNGSISE LQGDAANGSI SPVEVEAEVE 101: EVKVDDLATQ SIWGQMKEIV MFTGPAAGLW LCGPLMSLID TAVIGQGSSL ELAALGPATV ICDYLCYTFM FLSVATSNLV ATSLARQDKD EVQHQISILL 201: FIGLACGVTM MVLTRLFGSW ALTGVKNADI VPAANKYVQI RGLAWPAVLI GWVAQSASLG MKDSWGPLKA LAVASAINGV GDVVLCTFLG YGIAGAAWAT 301: MVSQVVAAYM MMDALNKKGY SAFSFCVPSP SELLTIFGLA APVFITMMSK VLFYTLLVYF ATSMGTNIIA AHQVMLQIYT MSTVWGEPLS QTAQSFMPEL 401: LFGINRNLPK ARVLLKSLVI IGATLGIVVG TIGTAVPWLF PGIFTRDKVV TSEMHKVIIP YFLALSITPS THSLEGTLLA GRDLRYISLS MTGCLAVAGL 501: LLMLLSNGGF GLRGCWYALV GFQWARFSLS LFRLLSRDGV LYSEDTSRYA EKVKAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)