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AT2G21160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17151019
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
AmiGO : plastid 15322131
AmiGO : vacuole 15215502
AmiGO : vacuole 15539469
SwissProt : endoplasmic reticulum 16381842
TAIR : plasma membrane 17644812
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
TAIR : vacuole 15215502
TAIR : plastid 15322131
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15322131 (2004): plastid
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translocon-associated protein (TRAP), alpha subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translocon-associated protein (TRAP), alpha subunit; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G16595.1); Has 246 Blast hits to 246 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 24; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNTMeggNOG:KOG1631EMBL:AY050351EMBL:BT020421
EnsemblPlants:AT2G21160EnsemblPlants:AT2G21160.1entrez:816651ExpressionAtlas:P45434
ExpressionAtlas:Q5M727GeneID:816651GO:GO:0005783GO:GO:0005789
GO:GO:0009535GO:GO:0016021Gramene:AT2G21160.1hmmpanther:PTHR12924
hmmpanther:PTHR12924:SF0InterPro:IPR005595OMA:DFNFHIQPaxDb:Q5M727
Pfam:P45434Pfam:PF03896PhylomeDB:Q5M727PRIDE:Q5M727
PRO:PR:P45434RefSeq:NP_565498.1STRING:3702.AT2G21160.1TAIR:AT2G21160
TMHMM:TMhelixUniGene:At.20513UniProt:P45434UniProt:Q5M727
Coordinates (TAIR10) chr2:+:9068428..9070207
Molecular Weight (calculated) 28169.00 Da
IEP (calculated) 4.84
GRAVY (calculated) 0.03
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)