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AT2G20570.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GBF's pro-rich region-interacting factor 1
Curator
Summary (TAIR10)
Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
Computational
Description (TAIR10)
GBF's pro-rich region-interacting factor 1 (GPRI1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GOLDEN2-like 2 (TAIR:AT5G44190.1).
Protein Annotations
eggNOG:ENOG410IH7KeggNOG:ENOG4111SK7EMBL:CP002685EnsemblPlants:AT2G20570
EnsemblPlants:AT2G20570.2entrez:816579ExpressionAtlas:F4IVF9Gene3D:1.10.10.60
GeneID:816579GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G20570.2hmmpanther:PTHR31312hmmpanther:PTHR31312:SF1
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT2G20570OMA:RISNNEGPaxDb:F4IVF9Pfam:PF00249
Pfscan:PS51294PRIDE:F4IVF9PROSITE:PS51294ProteinModelPortal:F4IVF9
Proteomes:UP000006548RefSeq:NP_001189562.1SMR:F4IVF9STRING:3702.AT2G20570.2
SUPFAM:SSF46689TAIR:AT2G20570tair10-symbols:GPRI1TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.24134UniProt:F4IVF9
Coordinates (TAIR10) chr2:+:8855486..8857522
Molecular Weight (calculated) 47947.40 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.50
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)