AT2G20240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3741) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 343 Blast hits to 303 proteins in 41 species: Archae - 0; Bacteria - 9; Metazoa - 36; Fungi - 24; Plants - 254; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8727778..8730086 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 79603.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||
| Length | 713 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPDLRPGVFS KSKETSTESM KKLIAREMSK DVVEDRQSSN NVVAKLMGLE TSAPRSRSKS SSRCSLTCVG SKEAGKHHRE DETWDQKASN LSSKASMSDK 101: QMDLVRRKFM EAKHLVTDDR LHRSSELQEA LQVLSSNKDL FVKFLQESNS LFPQHLSDFQ PVPPHPDAKR ITVLRPSKAV GVQKCLAEDS KKPASLNQET 201: GWIDAVQPTR IVVLKPSPGK SLDIKAIASS PPYFDEAGDA ETREVAKEIT RQIRETVEGH CRNETLSSSS SSVLSNGYMG DDCSLNRSNY EYLVGNITNS 301: EIMSPSSRHS WDCANKFESP FSSSSLSRVS FSPDSSVYRE AKKRLSERWA MMSLNGDTQQ PKNFPKVSTA LGEVLALSET KVPTGSSEET NKVKQETRRS 401: ISCIGSGLDQ VESTSDSLNI LERSRSVPEI RLNGGTSKAQ APQELTESRS LKSSWKVSSL FFFRNKKSNK DKTFAPSQLA IHRDAFQEQR IFTSEGDVEN 501: ENQDQPSPVS VLQPAFEEEC SGSVKPKTTQ GEEMSLKSNL IDKSPPIGTI ARILAWEDES YTDTSKPAMG IEEDEDWYGF IKTLLTASGF SGSDSLMTRW 601: HSLESPLDPS LRDKFANKEL IKRRKQRSNR KLVFDCVNAI ITETTSTLAH TGLTKGFNML EHVWTELQEW AVNDEVAGKM WSYGLQVEMN NLGIEIEVIL 701: LQELVEEAVF DLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)