AT2G19910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-dependent RNA polymerase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-dependent RNA polymerase family protein; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8595820..8600757 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112765.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 992 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNNGCDEVS PRSEIALLGS VETMLEKIYE KHNHRLPISV ETRRKLSSIS EELALETLRK VFNKPYLKTL DGLIMYFVKG TVTVDGSPRL SPGESPVQSP 101: RTPAKKSCRA SQDVSLDLET PSPKFMKREE NGGSKYIPPL LALGELEFKK AFLLLSYIGG ESLVEEVISG DQIRKWKDLP MVSYEAAVWN RLGQRYCSPK 201: ERRRPLEGDS GMTHYYQCHV ATDGSYKFKG HLLENTGTHL HKVLGDDNVL TVKFDKVLGV ETYCNDLYST YKGIAKNGIM VGLRRYRFFV FKDGGKEEKK 301: KDVSTKGVKC YFIRTDSTAS IDMQNPYIFA GKSMHEARMH FMHVNTLSSL PNYMSRFSLI LSKTKTLEVD MTGITFEQID DIHCHDQDDK DVLDKNGKPC 401: IHSDGTGYIS EDLARMCPVN IFKGKSMRSN NIQSKNLNFE GQGPCGQEPP LLIQFRIFYN GYAVKGTFLT NKKLPPRTVQ VRPSMIKVYE DRTLSNLSTF 501: NSLEVVTTSN PPRKARLSRN LVALLSYGGV PNDFFLNILR NTLEESKTIF YSERAAFKAA INYGDDQYTA DMILVGIPLD EPYLKDRLSY LLKTERNALK 601: AGRFPIDESY YIMGTVDPTG ELKENEICVI LHSGQISGDV LVYRNPGLHF GDIHVLKATY VKALEDYVGN AKFAVFFPQK GPRSLGDEIA GGDFDGDMYF 701: ISRNPKLLEH FKPSEPWVSS SKPSKIYCGR KPSELSEEEL EEELFKMFLK ARFCKRDVIG MAADCWLGIM DPFLTLGDES AKEKYERKKN ILKLIDIYYD 801: ALDAPKKGAK VDLPPDLEIK NFPHYMERDP KRDFRSTSIL GLIFDTVDSH NAEEPPPSEI SKLWYFEDEP VPKSHMDKFT SWYENYRSEM SQAMMETDKV 901: KRNQLTNEVI QRYKQDFYGA AGFEDSNKSL EELYPQALAL YNVVYDYAIQ EGVAKCTFAW NVAGPVLCKF YLKKTKDKSV VASTSVLKKL LG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)