AT2G19440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.890 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G64760.2); Has 2685 Blast hits to 2621 proteins in 154 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 44; Plants - 2618; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8418164..8419806 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52016.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLLAFVVGF GIMGIVMVDG LGVNWGTMAT HKLPPKKVVQ MLKDNNINKV KLFDADETTM SALSGSGLEV MVAIPNDQLK VMGSYDRAKD WVHKNVTRYN 101: FNGGVNITFV AVGNEPFLKS YNGSFINLTF PALQNIQNAL NEAGLGSSVK ATVPLNADVY DSPSSNPVPS AGRFRPDIIG QMTQIVDFLG NNSAPITINI 201: YPFLSLYGND DFPLNYAFFD GAKPVDDNGI AYTNVFDANF DTLVSALKAV GHGDMPIIVG EVGWPTEGDK HANSGSAYRF YNGLLPRLGE NRGTPLRPTY 301: IEVYLFGLLD EDAKSIAPGE FERHWGIFKF DGQPKFPIDL SGQGQNKLLI GAENVTYQPK KWCMFNTEAK DLTKLAANID YACTFSDCTA LGYGSSCNTL 401: DANGNASYAF NMYFQVKNQD EDACIFQGLA TITTKNISQG QCNFPIQIVA STASSFSSSL VLLIAGVWFL LSGVMFEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)