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AT2G19330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 6
Curator
Summary (TAIR10)
Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC003058EMBL:AY849576
EMBL:CP002685EnsemblPlants:AT2G19330EnsemblPlants:AT2G19330.1entrez:816450
Gene3D:3.80.10.10GeneID:816450Genevisible:O64566Gramene:AT2G19330.1
hmmpanther:PTHR23155HOGENOM:HOG000241007InParanoid:O64566InterPro:IPR001611
InterPro:IPR003591InterPro:IPR032675iPTMnet:O64566KEGG:ath:AT2G19330
OMA:TIENCRSPaxDb:O64566Pfam:O64566Pfam:PF13855
Pfscan:PS51450PhylomeDB:O64566PIR:T01281PRIDE:O64566
PRO:PR:O64566PROSITE:PS51450ProteinModelPortal:O64566Proteomes:UP000006548
RefSeq:NP_179523.1SMART:SM00369SMR:O64566STRING:3702.AT2G19330.1
SUPFAM:SSF52058TAIR:AT2G19330tair10-symbols:PIRL6UniGene:At.51204
UniProt:O64566
Coordinates (TAIR10) chr2:+:8372947..8374453
Molecular Weight (calculated) 42813.80 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.35
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MICEEAYHQQ PQIQKEQMMT MDQRNNHQRK RSPLSSPSSP SSPSSPSSPK SPSFNNNEEE RLEVVNLSGM ALESLPNPSL NLAQICKLDL SNNHLQTIPE
101: SLTARLLNLI ALDVHSNQIK ALPNSIGCLS KLKTLNVSGN FLVSFPKSIQ HCRSLEELNA NFNKLIRLPD SIGFELTNLR KLSINSNKLI SLPISITHLT
201: SLRVLDARLN CLMILPDDLE NLINLEILNV SQNFQYLSAL PSSIGLLMNL IELDVSYNKI TVLPESIGCM RRLRKLSVEG NPLVSPPIEV MEQNLQVVRE
301: YLTQKMNGGS PRSPSKKKSW GFGKLVKYGT FNGGSRSWNR EEREGFIMPE YRSIDSLASP RYSGMFSPRR LFSPRTYFSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)