AT2G19120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 5930 Blast hits to 5690 proteins in 1157 species: Archae - 188; Bacteria - 1788; Metazoa - 1227; Fungi - 954; Plants - 650; Viruses - 225; Other Eukaryotes - 898 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8287036..8291802 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121529.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.25 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||
| Length | 1090 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSDASAKEN TQDLSDYKGM IETGGEGSVR DELQEPGLMV KQREVKGVEA SYAVKCANTT VKRKMDQHKE AMLGKKRNRQ TRFLNLEDVK QAGTVNTSTP 0101: RRQNFAQAVP TRSSAVNPPA EHGGESQSQS HQNLKSVDFP STGGIHSESA EQKTESNGES YSGLLGKPRR LNRDEEPSAE GMGTSVSRQA SWKQPANIRQ 0201: PKSGHSSSRK VSYSQRSFKK PATSSTQYQD TSVERLIREV TNEKFWRHPE DTELRSVPER FESMEEYVRV FEPLLFEECR AQLYSTWVEL AEANTYVKVR 0301: IKSIERRERG WYDVILNSLN GCKWAFKEGD VAVLSTPLPE SDEDHEDAGR VAGTVRRHIP VDTRDPRGAT LHFYVGNSGG TGSKIDDSHI LRKLKPQDIW 0401: HLTVLGSLAT TQREYVALHA FSRLNPQMQN AILNPSPEQF PSYEEQTPAT PDCFTTSFVD HLHRSFNAPQ LAAIHWAAMH TAAGTSSGVK KQEPWPFTLV 0501: QGPPGTGKTH TVWGMLNVIH LVQYQQYYTS LLKKLAPETY NQANECSSSD NILSGSIDEV LQNMDHNLFR TLPKLCAKPR MLVCAPSNAA TDELLSRVLD 0601: RGFIDGEMRV YRPDVARVGV DSQSRAAQAV SVERRSDQLL AISRDEILRH MRNLRLQETQ ISQNIAGLKR ELNAAAFATR SQGSVGVDPE VLISRDQKRD 0701: ALLQHLAAVV EARDKVLVEI SRLLIVEGKF RAGNNFNLEE ARASLEASFA NEAEIVFTTV SSSGRKLFSR LTHGFDMVVI DEAAQASEVG VLPPLALGAA 0801: RCVLVGDPQQ LPATVISKAA GTLLYSRSLF ERFQLAGCPT LLLTVQYRMH PQIRDFPSRY FYQGRLKDSE SISSAPDEIY YKDPVLRPYL FFNISHGRES 0901: HRGGSVSYEN VDEARFCVGV YMHLQKTLKS LGAGKVSVGV ITPYKLQLKC LKHEFGNALG QDELKEIYIN TVDAFQGQER DVIIMSCVRA SGHGVGFVSD 1001: IRRMNVALTR ARRALWVMGN ASALMKSEDW AALISDARGR NCFMEMDSLP LDFPIPKVSS YNPMAPNNGL ITSKLYPSDA PIIGLHTKLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)