AT2G18876.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Afadin/alpha-actinin-binding protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.2); Has 2181 Blast hits to 1953 proteins in 285 species: Archae - 6; Bacteria - 183; Metazoa - 1166; Fungi - 140; Plants - 107; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8170594..8172287 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32371.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.18 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 284 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARLEAKVER LETQLQAKER ELGSVTRTEA KNTAALKTQN EKLQKERDEF QRMVIANQQV KTQQLHETKK KEKEYIKLQE RLNQVLMEKK KETRSGMEIM 101: NLLQKEGRQR GTWSGKKTDS DFYKKIVDAY EAKNQELMAE NTDLRALLRS TQGDMRSFLN ASGGLTNQSL VANGRHGADP SQSPLGGKTD VFDLPFRMAR 201: GQIEDSLRSK MVSIKERMGQ LVDAQKEVSI TSEASERELE LEAQLVEARS IIQEQESIMS KHLPKTDRRR NSAPPHSSVN GLRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)