AT2G18840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.941 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Integral membrane Yip1 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT4G30260.1); Has 825 Blast hits to 825 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 402; Fungi - 189; Plants - 114; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8158288..8159848 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30251.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQGDTVPLH PSSQSDIDEI ENLINESVQS GPGTVLAARP PSPTRPSIPV SSSSSSSPFM QSNLPPLHPS SSAQKVTHVP VPPPLPAVSN SSNFQGASAF 101: GSPPNTLTEP VWDTVKRDLS RIVSNLKLVV FPNPYREDPG KALRDWDLWG PFFFIVFLGL TLSWSASVKK SEVFAVAFAL LAAGAVILTL NVLLLGGHII 201: FFQSLSLLGY CLFPLDVGAV ICMLKDNVIL KMVVVSVTLA WSSWAAYPFM SSAVNPRRKA LALYPVFLMY VSVGFLIIAI N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)