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AT2G18740.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.596
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 429 Blast hits to 429 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 172; Fungi - 98; Plants - 81; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG1774EMBL:CP002685EnsemblPlants:AT2G18740
EnsemblPlants:AT2G18740.2entrez:816389ExpressionAtlas:A8MRL6GeneID:816389
GO:GO:0000398GO:GO:0005681GO:GO:0019013Gramene:AT2G18740.2
hmmpanther:PTHR11193HOGENOM:HOG000223543InterPro:IPR001163InterPro:IPR010920
InterPro:IPR027078KEGG:ath:AT2G18740KO:K11097PANTHER:PTHR11193
PaxDb:A8MRL6Pfam:PF01423PhylomeDB:A8MRL6ProteinModelPortal:A8MRL6
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_001077914.1
SMART:SM00651SMR:A8MRL6STRING:3702.AT2G18740.1SUPFAM:SSF50182
TAIR:AT2G18740UniGene:At.39949UniProt:A8MRL6
Coordinates (TAIR10) chr2:+:8123334..8124581
Molecular Weight (calculated) 9255.33 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.41
Length 78 amino acids
Sequence (TAIR10)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GFYSKETT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)