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AT2G18320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.800
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G19880.1); Has 213 Blast hits to 206 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC006439EMBL:CP002685EnsemblPlants:AT2G18320EnsemblPlants:AT2G18320.1
entrez:816347GeneID:816347Gramene:AT2G18320.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF120InterPro:IPR006527KEGG:ath:AT2G18320Pfam:PF07734
PhylomeDB:Q9ZPW4PIR:H84562Proteomes:UP000006548RefSeq:NP_179423.1
TAIR:AT2G18320UniGene:At.52802UniProt:Q9ZPW4
Coordinates (TAIR10) chr2:+:7956220..7957531
Molecular Weight (calculated) 12023.40 Da
IEP (calculated) 4.26
GRAVY (calculated) 0.16
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLAIDLDM FGHGSAGQVL GRTDVDRVEY QYSTKSLLSI YIFYEETCGF FIDEEKKVFV VFELDESQAY KYAYIIGENI CLKKLDLGEV RTFSCPIVCS
101: SSYVPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)