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AT2G18220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Noc2p family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink).
Protein Annotations
BioGrid:1694eggNOG:COG5604eggNOG:KOG2256EMBL:AC006439
EMBL:CP002685EnsemblPlants:AT2G18220EnsemblPlants:AT2G18220.1entrez:816337
GeneID:816337Genevisible:Q9ZPV5GO:GO:0005634Gramene:AT2G18220.1
hmmpanther:PTHR12687hmmpanther:PTHR12687:SF4HOGENOM:HOG000078794InParanoid:Q9ZPV5
InterPro:IPR005343iPTMnet:Q9ZPV5KEGG:ath:AT2G18220KO:K14833
ncoils:CoilOMA:VLAFRCAPANTHER:PTHR12687PaxDb:Q9ZPV5
Pfam:PF03715Pfam:Q9ZPV5PIR:G84561PRIDE:Q9ZPV5
PRO:PR:Q9ZPV5ProteinModelPortal:Q9ZPV5Proteomes:UP000006548RefSeq:NP_179414.2
STRING:3702.AT2G18220.1TAIR:AT2G18220UniGene:At.43042UniProt:Q9ZPV5
Coordinates (TAIR10) chr2:+:7928254..7931851
Molecular Weight (calculated) 86966.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.56
Length 764 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAKDDKKRV KKLKSKKLEA EEELNNVQEI DAHDIVMEQK SDKKRGKKVK SKKAEAEEHE EELKRLQEKD PDFFQYMKEH DAELLKFDAT EIEDDADVEP
101: DTDLEDTEKE GDDEATKMEI AKKVHVQKTI TASMVDAWSK SIEDEAKLGG VRSILRAYRT ACHYGDDTGD DQSTKFSVMS SEVFNKIMIY VLSEMDGILR
201: KLLRFPEDTR GTKETILELT NTRPWKNYNH LVKSYLGNSL HVLNQMTDTE MITFTLRRLK HSSVFLAAFP SLLRKYIKVA LHFWGTGSGA LPVVSLLFLR
301: DLCIRLGSDC VDDCFKGMYK AYVLNCQFVN ADKLKHISFL GNCFIELLGT DISAAYQHAF VFIRQLAMIL REALNTKTKE AFRKVYQWKF IHCLELWTGA
401: VCAYSSQSEL RPVAYPLAQI ITGVARLVPT ARYTPLRLRC VRMLNRLAAA TGTFIPVSML LVDMLEMKEL NRPPTGGVGK GVDLRTLLKV SKPAVKTRAF
501: QEACVYTVVE ELVEHLSQWS CSVAFFELSF IPTIRLRSFC KSTKAERFRK EMKQLISQIE ANSEFVNKKR ALIKFLPNDL AAESFLEDEK KAGKTPLLQY
601: AEIIRQRAQQ RNESLVESDV IVGENSAVFG KNAPSSDDED DEDRMEKGAA AFNSSWLPGS DSKEKEPEEE KTKKKKRKRG GKSKTEKKQD EQGLGEDDVV
701: EDFVLSSDEE EEDLFDIGGD KDEDDAVDEI ADPETKTSKK TKGTYKTWHK AYKKTKKKKA RVAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)