AT2G18080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.979 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Serine carboxypeptidase S28 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
embryo sac development arrest 2 (EDA2); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, megagametogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36195.3); Has 1319 Blast hits to 1266 proteins in 190 species: Archae - 2; Bacteria - 51; Metazoa - 600; Fungi - 218; Plants - 260; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7857198..7859715 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55810.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLEFGFILI NIFTAIVSFS TLSHALLHPS SVSHNVSRSR YYMTTNELWF NQTLDHESPN DHRKFRQRYY EFMDYFRSPD GPMFMIICGE GPCSGIANDY 101: INVLAKKFQA GVVSLEHRYY GKSSPFNSLA TENLKYLSSK QALYDLASFR QYYQESLNKK LNISSGGSDN PWFFFGISYS GALSAWFRLK FPHLTCGSLA 201: SSAVVRAIYE FSEFDQQIGE SAGQECKLAL QETNKLLELG LKVKNKAVKS LFNATELDVD ADFLYLTADA AVMAFQYGNP DKLCVPLVEA KKNGSDLVVT 301: YSTYVREYCM RIWGLRVRTY NRKHLRNTVV TADSAYRLWW FQACTELGYF QVAPKYDSVR SHQINTTFHL DLCKSLFGKD VYPKVDATNL YYGGDRLAAT 401: KIIFTNGSED PWRHASKQNS THEMPSYIIK CRNCGHGSDI RGCPQSPMVI EGKSNNCSLP DYVNKVRQQM VEHIDLWLSE CRQSIRSSI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)