AT2G17975.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (Ran-binding) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT2G26695.1); Has 1281 Blast hits to 744 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 88; Plants - 606; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7822238..7823970 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30237.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||
| Length | 268 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDGREGDWE CLGCRNRNYA FRSFCNRCKQ PRLIMDNNTS PNSKWLPRIG DWICTGCTNN NYASREKCKK CGQSKEVAAL SALAIPGASL QTHLHYFTRG 101: PESHDQPGSL LAFSNATNQA SVHKEWRSGD WICRCGFHNY SSRIQCKKCN EIAPLALGTK RLASEALAHE WDSKRLNQGY TSMQTQSAIY ASFPGMSLGR 201: VSNWQLPLPF LQQHSTPALL GMGVKQWRDG DWMCTNCKNH NYASRAECNR CKTTRDILDQ DITPTEQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)