AT2G17780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.915 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLAC8 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mid1-complementing activity 2 (MCA2); CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT4G35920.2); Has 737 Blast hits to 732 proteins in 87 species: Archae - 0; Bacteria - 17; Metazoa - 44; Fungi - 45; Plants - 605; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7725155..7726952 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47417.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 416 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSWDQLGE IASVAQLTGI DALKLIGMIV NAANTARMHK KNCRQFAHHL KLIRNLLEQI KNSEMNQRSE ILEPLQGLDD ALRRSYILVK SCQEKSYLYL 101: LAMGWNIVNQ FEKAQNEIDL FLKIVPLINM ADNARIRERL EAIERDQREY TLDEEDRKVQ DVILKQESTR EAATSVLKKT LSRSYPNMGF CEALKTEEEK 201: LQLELQRSRA RYDADQCEVI QRLIDVTQTA ATVEPNLEKV LTKKEELTSS KKRDDLYDTD SSSIRADSRS TSYVSSGHEL LSGRSLQHRG NWHADLLDCC 301: SEPCLCLKTL FFPCGTLAKI STVATSRQIS STEVCKNLIV YSLILSCCCY TCCIRKKLRK TLNITGGCID DFLSHLMCCC CALVQELREV EIHRASYGTE 401: KSNKEMSPPT PQFMEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)