AT2G17750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NEP-interacting protein 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NEP-interacting protein 1 (NIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G19360.1); Has 746 Blast hits to 699 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 723; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:7709238..7711151 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45212.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMIARFVLSI LIVAAIVSGS EFSDTRDAKV EKILKKLNKP ALKSIKSPDG DIIDCVHMNN HPIYDHPLFK NYTIQMKPSS YPKGKNNESS DKEKQSVVTQ 101: LWTVNGKCPK NSIPIRRTRR KEILRTEYMQ RYDKKNPNII NHPKASTSNS IHEYAQIQAK GKFHGAHADI NVWKPFVQTP KEFSLAQMWV MAGPFSEVNS 201: VEAGWQVYQD RYGDDNPRYF IFWTADGYHS GCYNLDCQGF VPVSQKFALG AAVSNVSTFD GQQYHISTTI WKDPNSGNWW LKFGDEFVGY WPSILFNHLK 301: DGATEIQWGG EIINFKDGAL HTTTRMGSGH FAESGYQKAS YFKDVEIIDE RDIHSSPKEG YSYMTQESCY NIRSGYAKVW GVYFYYGGPG RNLNCK |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)