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AT2G17750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NEP-interacting protein 1
Curator
Summary (TAIR10)
Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
Computational
Description (TAIR10)
NEP-interacting protein 1 (NIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G19360.1); Has 746 Blast hits to 699 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 723; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX4XeggNOG:ENOG41104ANEMBL:CP002685EMBL:DQ446513
EnsemblPlants:AT2G17750EnsemblPlants:AT2G17750.1entrez:816284GeneID:816284
GO:GO:0009416GO:GO:0009535GO:GO:0031351Gramene:AT2G17750.1
hmmpanther:PTHR31589hmmpanther:PTHR31589:SF4InterPro:IPR004314InterPro:IPR025521
KEGG:ath:AT2G17750OMA:GAHADINPfam:PF03080Pfam:PF14365
PhylomeDB:Q1PF53Proteomes:UP000006548RefSeq:NP_179366.1STRING:3702.AT2G17750.1
TAIR:AT2G17750tair10-symbols:NIP1UniGene:At.52786UniProt:Q1PF53
Coordinates (TAIR10) chr2:-:7709238..7711151
Molecular Weight (calculated) 45212.40 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.57
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MMIARFVLSI LIVAAIVSGS EFSDTRDAKV EKILKKLNKP ALKSIKSPDG DIIDCVHMNN HPIYDHPLFK NYTIQMKPSS YPKGKNNESS DKEKQSVVTQ
101: LWTVNGKCPK NSIPIRRTRR KEILRTEYMQ RYDKKNPNII NHPKASTSNS IHEYAQIQAK GKFHGAHADI NVWKPFVQTP KEFSLAQMWV MAGPFSEVNS
201: VEAGWQVYQD RYGDDNPRYF IFWTADGYHS GCYNLDCQGF VPVSQKFALG AAVSNVSTFD GQQYHISTTI WKDPNSGNWW LKFGDEFVGY WPSILFNHLK
301: DGATEIQWGG EIINFKDGAL HTTTRMGSGH FAESGYQKAS YFKDVEIIDE RDIHSSPKEG YSYMTQESCY NIRSGYAKVW GVYFYYGGPG RNLNCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)