AT2G17690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with a domain of unknown function (DUF295) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an F-box domain containing protein that is regulated by non-CG DNA methylation. In drm1 drm2 cmt3 triple mutant background SDC expression is no longer suppressed and plants display abnormal development including curled leaves and reduced stature. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF DRM1 DRM2 CMT3 (SDC); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G65760.1); Has 234 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7682818..7684083 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48055.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 421 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDWSKLPEE LLGLIALRLY SVIELIRFRS ICKSWRSSAS GVNKNHSLSS PLIYFKPLQI ILARAQANGQ ILSKYHGTVL SRATFFRVTL ASSPDQGWLI 101: KSDTDLKYRN FHLLNCLSRK ALGRSRKLIS LSEFIVSEIQ ESYAVVGRRT RETASEFKRV FLVRVQGGDH RVLVIGIDGK IRFWKGGIWN GIKKQVAQFS 201: DFVLDEGLTY AVDTKGIMWW ISSAYDIIRY GTKLHENITN GSCGEKRFVR CRGELYIVDR LIDENLLKRK ADSYDDNAIV HFRNADYTNA DLWEDGNGND 301: DFFAAQAHRF IHVLHDNLGN VSCKPFERDP PKTIGFKVYK NDEELLKWVE VKSLGDKAIV IATDACFSVS AHEFYGCLPN SIYFTDKKEE EVKVFKLDDG 401: SITTMSESEQ SCFQMFVPSF L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)