AT2G17680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Arabidopsis protein of unknown function (DUF241) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35690.1); Has 438 Blast hits to 428 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:7679241..7680119 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33273.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||
| Length | 292 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMMMIKNHV RSISLQSRSH PSTAAIEESL DKFLITMNTS TMASSESVHS GLSGLEDLYD CSEDLLKMGS TQRVLSFSDE KKKKKRKVKG EFMEEMLDGS 101: LRLMDICNVS RDLMVETHEH VLGLQSCVRR RKDVDVSGYV GFRKNMRKEV KKLLGSLKNI NVGLVMRDHG YDQDGDIHFL AVIHAMRRVV YMTVSVLKSF 201: FEFLSGRQNG NDVRSKLALV LMNKKFHDHD KMVKNELENV DSAICGDSIS HDDLHEKLEE VEVWIGKFEK SLEGLFRGLI KTRASLLNII SQ |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)