AT2G17310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.972 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SUPPRESSOR OF NIM1-1 1 (SON1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17710.1); Has 1389 Blast hits to 1359 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7531212..7532324 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43324.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MALPWELEED ILSRLPPISL VRFRTVSKHW NSLFNDKTFI NNHLSRSRPE FIILTNSKIY SVDIIDHNNI DPTIRLHEIP TYDIHSRGTD LNRTIINTCD 101: EFLFYNYRYW DNMTALWNPW LRQVRWIEYA NQEFCVFGLG YDNSRPEKVY KILGHLFCHG KVLRDQKVVI YECASDSLRF IDRPEDDDWP ITETAKRSNV 201: SLNGNLYWFG CSNYENDEYY IRIFDFSTED FKPFCLLPCQ MSHSTDELVL AVYKGDRFSL LKQCSVTREI GVWVTKERIS NDNGNGGEGV EWLKLMTLSK 301: PNLPKLFGTV SYFIYGKTLY MCNGDDETAL ACIYIVREDV CKKFQIGSGN INCRHCVYTP NLLSLPLFIG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)