AT2G17210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.919 What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 43742 Blast hits to 13561 proteins in 221 species: Archae - 0; Bacteria - 12; Metazoa - 58; Fungi - 78; Plants - 42944; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:7485398..7487602 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 79296.50 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.02 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||
Length | 715 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGSHLCSKLQ ALSSKIKQAS VSGKWREVVS GYSEIQRAGV QFNDPFVFPI VFKACAKLSW LFQGNSIADF YMKCGDLCSG LREFDCMNSR DSVSWNVIVF 101: GLLDYGFEEE GLWWFSKLRV WGFEPNTSTL VLVIHACRSL WFDGEKIHGY VIRSGFCGIS SVQNSILCMY ADSDSLSARK LFDEMSERDV ISWSVVIRSY 201: VQSKEPVVGL KLFKEMVHEA KTEPDCVTVT SVLKACTVME DIDVGRSVHG FSIRRGFDLA DVFVCNSLID MYSKGFDVDS AFRVFDETTC RNIVSWNSIL 301: AGFVHNQRYD EALEMFHLMV QEAVEVDEVT VVSLLRVCKF FEQPLPCKSI HGVIIRRGYE SNEVALSSLI DAYTSCSLVD DAGTVLDSMT YKDVVSCSTM 401: ISGLAHAGRS DEAISIFCHM RDTPNAITVI SLLNACSVSA DLRTSKWAHG IAIRRSLAIN DISVGTSIVD AYAKCGAIEM ARRTFDQITE KNIISWTVII 501: SAYAINGLPD KALALFDEMK QKGYTPNAVT YLAALSACNH GGLVKKGLMI FKSMVEEDHK PSLQHYSCIV DMLSRAGEID TAVELIKNLP EDVKAGASAW 601: GAILSGCRNR FKKLIITSEV VAEVLELEPL CSSGYLLASS TFAAEKSWED VAMMRRLVKE RKVRVVAGYS MVREGNLAKR FLAGDKLSQS DSELNDVVQS 701: LHRCMKLDDT AGPIN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)