AT2G17060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.948 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G36150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7422411..7426877 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136030.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1195 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKESPTLRRY SMEASRQPQV FINFRGSELR YTFVYYLRTA LVKNGINVFT DNMEPKGRNQ KILFKRIEES KIALAIFSSR YTESSWCLEE LVKMKECMDA 0101: EKLVIIPIFY IVTPYTIKKQ MGDFGDKFRV LVDYVDDVTE KKWTDALKSV PLILGITYDG QSEEQLLINQ IVGEVQRVIK IISQGEGDEK NKMVCTNTST 0201: GSSFIPQNRN MVDPENQIEL VGLSQRLKEL KEKLDLSRKE TRIVGVLGMP GIGKTTLVKR LYDEWKHNFQ RHLHMVNIRQ KSKEYGTHSL ERMILKELLS 0301: DTYNDITEEM TYASVKDELL KKKVLLVLDD VSSKKQIQGL LGNLNWIRKG SRIVITTRDK ISISQFEYTY VVPRLNITDG LKQFSFYAFE DHNCPYPGNL 0401: MDLSTKFVDY ARGNPLALKI LGRELLSIDK DQWPKRLDTL AQLPIPYIQD LLRASYDDLS NQQKEVFLVV AWFFGSGDEY YIRSLVDTED PDSADDAASE 0501: VRDFAGNLLI SISSGRLEMH DLMATFAKKL CSSLSNENNY GYQMIWNHES FNAAAKNKRM RYVNQPRKKV TESEMDNVMG ILLDVSEMDN NMTLDSKFFS 0601: EMCNLRYLKV YNSQCSRDCD VGCKLTFPDG LKCSMENVRY LYWLQFPLKK LSKAFNPKNL IELNLPYSKI TRLWKESKEI SKLKWVDLSH SSELCDISGL 0701: IGAHNIRRLN LEGCIELKTL PQEMQEMESL IYLNLGGCTR LVSLPEFKLK SLKTLILSHC KNFEQFPVIS ECLEALYLQG TAIKCIPTSI ENLQKLILLD 0801: LKDCEVLVSL PDCLGNLRSL QELILSGCSK LKFFPELKET MKSIKILLLD GTAIKQMPIL LQCIQSQGHS VANKTLPNSL SDYYLPSSLL SLCLSGNDIE 0901: SLHANISQLY HLKWLDLKNC KKLKSVSVLP PNLKCLDAHG CDSLEEVGSP LAVLMVTGKI HCTYIFTNCN KLDQVAESNI ISFTWRKSQM MSDALNRYNG 1001: GFVLESLVST CFPGCEVPAS FDHQAYGALL QTKLPRHWCD SRLTGIALCA VILFPDYQHQ SNRFLVKCTC EFGTEDGPCI SFSSIVGDIN KRHVEKHGNG 1101: CIPSKASLRF QVTDGASEVG NCHVLKCGFT LVYTPNDSDD ISPARVVDIT TRDKEDGLEN ATSNKLSRND YEFSHQSNCG VTSRRDECFL SEELP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)