AT2G17050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.531 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G19520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7410835..7415610 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155232.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1355 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDYGACELVE DIARDMYEKI FPTKRIGIYR KMLKLEKIVY KQLWGIRSIG IWGMPGIGKT TLAEAAFDQF SGDYEASCII KDFDKEFLAK GLYHLWNEYL 0101: GENINNSFIK SGQKRLLIVL DNVLKPLDAD AFLNGFDWFG PGSLIIITSR DKQVLVQCGV NQIYEVEGLN KDEAKQLLHG CAFGIDWRKQ SGLETLAPYY 0201: ISVKYFSGNP LALSLYEEML SHMKSDKMEV KLLKLNHPPP QIMEVFKSNY NALNENEKSM FLDIACFFRG EKADYVMQLF EGCGFFPHVG IYVLVDKCLV 0301: TIVKRKMEMH NLIQIVGKAI SNEGTVELDR HVRLWDTSII QPLLEDEETK LKGESKGTTE DIEVIFLDMS NLKFFVKPDA FKSMHNLRFL KIYSSNPGKH 0401: QRIRFREALQ SLPNELRLLH WEDYPLQSLP QHFDPTHLVE LNMPYSKLQK LWGGTKNLEM LKMVRLSHSQ DLVEIEELIK SKNIEVIDLQ GCTKIQSFPA 0501: TRHLQHLRVI NLSGCVEIKS TQLEEFQGFP RNLKELYLSG TGIREVTSSI HLSSLEVLDL SNCKRLQNLP MGKGNLASLI KLMLSGCSKL QNIQDLPTNL 0601: KELYLAGTSI REVPSSICHL TQLVVFDAEN CKKLQDLPMG MGNLISLTML ILSGCSELRS IPDLPRNLRH LNLAETPIKK LPSSFEDLTK LVSLDLNHCE 0701: RLQHLQMESF ESVVRVDLSG CLELKYILGF SLQDITQLHE DGTDKVMLHG TPPCNVTLIL ETWRTRHVTP MEKSGSKFYL KLMPFVTTPY RSKLQSSLVF 0801: RMYAMVSLFL SKAYLLDIHI PQEICNLLSL KTLDLSGNNF GKLPESIKQF RNLESLILCH CKNLESLPEL PQSLEFLNAH GCVCLKNIHR SFQQFPRHCT 0901: FSNCFEISPD IVREILEARV AQMVIDHTLQ KLIEAPAFSF SVPAFRDPNY IFHLNRGSSV MIRLTPSIET LLGFQISVAV AFWNDSYSNA GFGISHMFIF 1001: YDVSMHPCVV DGNDFNILDD VVHFELLPVS RENKILDDCC TVTECGVYAI TENVDQTNLD FRGPSFALLP PYKKRKRSFS GSEDIEMENQ RLNISKTKQG 1101: DVPEKISQAD TAYLTSPSLL QRRSHQVFLS FSEDVPRYFV SYLIKKLKWI GITVVYSGFM GGKSMSRPEV TQAIEESSIS VVILSKDYVS SSKCLDELVE 1201: IIRWREENLG NRVMPIYYEM GTSDVMKQAK TIGNRLVETY LGKVVEKPEL RWMRALAYIV NIVGESSQYW VDKAKMIEKT VVDVSNQMNI LESNEAGLLF 1301: IYQEEENMEN FKRNVYDEMN GVRIIPIWHV YAFLLIYLFL LILKSRFILR DVIHK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)