AT2G17010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.969 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mechanosensitive ion channel family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mechanosensitive ion channel family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel family protein (TAIR:AT2G17000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7392914..7395970 | ||||||||
| Molecular Weight (calculated) | 89795.60 Da | ||||||||
| IEP (calculated) | 8.44 | ||||||||
| GRAVY (calculated) | -0.36 | ||||||||
| Length | 779 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFRNSFKSH SSYKQIRSPG DQSEPSPEHL PILHDHHPDH SGMVVDDQKP DSTRSSLDDG RNAPVERDAS YKFWQDNTTG TSTDHTAVRT SDKDPIAISR 101: KGDRLSGSFD FVHGKLPVDE SPTKMVAGEP VNRQWRGRNN EEITLDVDQE NDDVSHQTMP TPTSTARTSF DASREMRVSF NVRRAGGAFV AGSVPSSSSH 201: SSSSSSATMR TNQDQPQLQE EEVVRCTSNM SFQRKSELIS RVKTRSRLQD PPREEETPYS GWRSGQLKSG LLADIDEEDD PLAEEDVPDE YKRGKLDAIT 301: LLQWLSLVAI IAALACSLSI QSWKKVRVWN LHLWKWEVFL LVLICGRLVS GWGIRIVVFF IERNFLLRKR VLYFVYGVRR AVQNCLWLGL VLLAWHFLFD 401: KKVQRETRSR MNHKNISAWN MKRLMKIVRN VSLTTLDEQM LESTYEDEST RQIRSEKEAK AAARKIFKNV EQRGAKYIYL EDLMRFLRED EAMKTMGLFE 501: GAPENKRISK SALKNWLVNA FRERRALALT LNDTKTAVNK LHHMINIVTA IVIVVIWLVL LEIASSKVLL FVSSQVVLLA FIFGNTVKTV FESIIFLFIV 601: HPYDVGDRCE IDSVQLVVEE MNILTTVFLR YDNLKIMYPN SLLWQKSINN YYRSPDMGDA IEFCVHITTP LEKISVIKQR ISNYIDNKPE YWYPQAKIIV 701: KDLEDLHIVR LAIWPCHRIN HQDMAERWTR RAVLVEEVIK ILLELDIQHR FYPLDINVRT MPTVVSSRVP PGWSQNQPA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)