AT2G17000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.677 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mechanosensitive ion channel family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mechanosensitive ion channel family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 6 (TAIR:AT1G78610.1); Has 1986 Blast hits to 1976 proteins in 685 species: Archae - 66; Bacteria - 1304; Metazoa - 0; Fungi - 206; Plants - 211; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7388893..7392105 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97377.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 849 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFRKPFKSH SSYKQIISTG DQNEKTKKKK KLANLDDGDI AKTQSSGSSF DGNSYKFWQD IATDDYTKSG SFDFPQYREE ITLDVNEETE ETEDVSNNNN 101: LSGSKETRVF FKINSSGTNN MSGSVRSCTS STSFSSATMR LNLEQQLEDE GEVVVRCSSV RKTELVSRAK ARSRLIDPPQ EEEQQYSSWI GTSDQLRSGL 201: LGRHSDDIEE EDDSSAEEDV PVEYRKLKMD AITLLQWMSL IALVVALVLS LGLHTWRNAT LWSLHLWKWE VVLLVLICGR LVSGCGIRII VFFIERNFLL 301: RKRVLYFVYG VKTAVQNCLW LGLVLLAWHF LFDKKVEKET QSDVLLLMSK ILVCFLLSTV LWLIKTLVVK VLASSFHVST YFDRIQEALF HHYLIETLSG 401: PPMLELSRIE EEEDRTQDEI YKMQKGGADL SPELCSAAFP QEKSGSTMNM KFSPIIPKTG SDNGITMDDL HKMNQKNVSA WNMKRLMKIV RNVSLSTLDE 501: QALQNTCEDE STRQIRSEKE AKAAARKIFK NVAQPGTKHI YLEDLMRFLR VDEAMKTMCL FEGALVTKKI TKSALKNWLV NAFRERRALA LTLNDTKTAV 601: NKLHHMISFL TAIVIIVIWL ILLEIATSKY LLFLTSQVVL LAFMFGNSLK TVFESIIFLF IIHPYDVGDR LLIDTVEMVV EEMNILTTVF LRADNLKIVY 701: PNILLWQKAI HNYNRSPDMG DEVTCCVHIT TPPEKIAAIK QRISSYIDSK PEYWYPKADV IVKDVEDLNI VRIAIWLCHK INHQNMGERF TRRALLIEEV 801: IKILLELDIQ YRFHPLDINV KTMPTVVSSR VPPAWSQNPD LRRIILLEC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)