AT2G16970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.919 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 15 (MEE15); FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16980.2); Has 2410 Blast hits to 2410 proteins in 970 species: Archae - 12; Bacteria - 1693; Metazoa - 248; Fungi - 4; Plants - 94; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7369549..7375528 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48935.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEYRLGELR HLLTTVFLSG FSEFLVKPVM TDVTVAAVCS GLNETCSLAV YLTGVEQVTV GLGTMVMMPV IGNLSDRYGI KTLLTLPMCL SILPPAILAY 101: RRDTNFFYAF YITKILFDMA KNVCGRKRIS MFGVLAGVRS ISGVCATFSA RLLPIASIFQ VAAISFFFGL VYMRVFLKER LHDDDEDDCD EDDNTSGRNH 201: HDGGDLTMLA EPILRDAPTK IHIVLNTKYS SLKDMVSLIK NSTILVQTLV VTFFATFAQS GMQSAFLYFL KARFGFNKND FAELILLVTI IGSISQLFIL 301: PKLVSAIGER RVLSTGLLMD SVNAACLSVS WSAWVPYATT VLVPVTMFVM PSVCGIASRQ VGPGEQGKVQ GCISGVKSFS GVVAPFIYSP LTALFLSEKA 401: PFYFPGFSLL CVTFSLMIGF FLSLLIRDVP SPSMNKAINN ISREEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)