AT2G16360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein S25 family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein S25 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: Ribosomal protein S25 family protein (TAIR:AT4G34555.1); Has 650 Blast hits to 650 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 134; Plants - 144; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7076713..7077366 | ||||||||
| Molecular Weight (calculated) | 14308.60 Da | ||||||||
| IEP (calculated) | 11.61 | ||||||||
| GRAVY (calculated) | -0.59 | ||||||||
| Length | 125 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDFIRRIQI SCVVSLTDSR HQRRTKSHHH PLNPPNPVAE SRKRSKGKQK EKVNNMVLFD QATYDKLMSE APKFKLITPS ILSDRLRING SLARKAIRDL 101: MVKGTIRMVS THSSQQINTR ATCLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)