AT2G15770.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cupredoxin superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cupredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT2G15780.1); Has 18677 Blast hits to 5926 proteins in 719 species: Archae - 60; Bacteria - 4775; Metazoa - 5085; Fungi - 1787; Plants - 1658; Viruses - 83; Other Eukaryotes - 5229 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:6871257..6872245 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33200.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 301 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSGSQKKL LILVVAIACL SSSGAEAWSW SWSYGSGWGW GSDGSSTSSS GTGSDSDGSS WSWGSDDNSG SGLGSNSNNG SGWGWGTGSN RGSGSGSSTN 101: PDGSRRSWNW SLKSGWSWSW GSNDNDSNSS GSDSGSGLDR ETPKKIIVGG SDGWKKGLDY KDWASKNAPF YVNDVLVFKY DKSAKRRNNV YLFKDRWSYM 201: NCDIKNARKI GSTRKGSEES FNFTLKKIQP YFFASGEHDG DYCRNHNMKF TIFPVLTVLI KSYHVFMLGF LFVLFCFGYE IFEFDHDLVH DWLGFKSDLQ 301: P |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)