AT2G15180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc ion binding;nucleic acid binding (TAIR:AT3G43470.1); Has 78 Blast hits to 75 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 71; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:6588743..6590167 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54061.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METIIYSSSD EEDSYGCSQD SYYNETRFVE SWHDDGYSSS SDFEEEPDGG APEPEPPDRY SSHATPPSYS KPWISWNPIP KTNFYPTFYP TRKVIYKLFV 101: HNGSKTYGPE FFLFSGLGYL QWESNMNYYF EFHSTAQEDK LSIALGQLKG SALWWWDQDE YNRWYERRAP IRTWERLKWN MCAKYSPQSL SPAHVVQQKQ 201: KPTFLPQMQA TTQGKCTFQT KHVELTCYRC KQEGHIAKIC PTRETTTKVG LEQQELLKAK EKQEIVSSPK GKNEQAETCQ TDLNNSMNVI THLSSAKSIA 301: KVSGTKENIT DQGEASTMEK VFTEESKNQG GPTLDEITVN KDESVNDTIQ IKGEPSDAQQ FPKTQCNLLN PYTLQWTNLT YLCVGKKVLR TKPLEEGGDD 401: VRMGADVPAD ALVDRLLAGF FDGLSDGLPE VLHVSNQLVR TKESYPFLPF CASQSHIWKL GDPLRHPEPF TLNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)