AT2G14830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of Vps4 activity in the MVB pathway protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G51900.1); Has 750 Blast hits to 708 proteins in 146 species: Archae - 0; Bacteria - 9; Metazoa - 186; Fungi - 79; Plants - 322; Viruses - 3; Other Eukaryotes - 151 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:6362524..6365818 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52666.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.48 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEKAPSSSS SSSPPKEVAD ETQDWILGAG SGWVEARKTC DHLNTLSPDL LHLPTPDTPC SRYKRTEHDT MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN 101: KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN EAVSTLVFAS ARCGDLPELR ALRVLFGKRY 201: GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK 301: FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN 401: VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)