AT2G14710.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.946 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G16580.1); Has 1313 Blast hits to 1288 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:6298936..6300024 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41658.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 362 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAHLKNLPWE LIEEILSRVP PKSLVRFRTV SKQWNALFDD KTFINNHKMT FRFILATKSK IYSVSIDPVI VVRELPLGIP GLESLELNNL VDCNELLVCV 101: KNNGAVVWNP WLGQSRWIQP SLNHSPMVFD GIVYDNKKYK MVAFSGLWKI YDFSSDVWID HKSKSTNSNT NVINVQTAVC LNGNLYWVCF REKTDPLCYH 201: IHKFGFSNSI WVRFCNLPFG RNHDGDALVL GVFRGDRFSL LKQCMVTKKI EVFVTENKIN HENGDDVVWK NFMTFSSPNL PDLVETVKFS NPSYFIEGKR 301: LVVCSRDNTG HAWIYILGDS KLISKTRIEC VVDPWPLHCT FVPSLVPVPA PCRREEQAEL QV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)