AT2G13900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G02350.1); Has 1291 Blast hits to 617 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1281; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5833102..5835087 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76826.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||
| Length | 661 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSNPVGVFR EREIDGKPFH IYTLSSQTDT TIPSSSGETA IDGDDHLSLQ QPLFLCPSLR LRVHEENNSY TEFLPYKTSP HFPSIGSVDQ QVQHLLDSDS 101: QQVHDLLHSD SSHDDDDDDD VICKLPVVPI YWCNSKELDY DQFNCGACER SKIGTNYYVC LTCDLMFHKE CVESPLEIKH PSYPFLSLKL YNRPGHRVSC 201: MCCDLALCSM LYHCPTYKLS MHPVCAMKPI PIFIDHSKRH PHLLTFFPKQ ASLLCDVCGL VKESFPTYVC VRCIFVVHRD CIYFPFVIKI CRHHHRISFT 301: SSLPSGKWSC GVCRQKVDNN CGAYTCNKCN HYFVHTRCAL REDVWDGKDL EGVPEEPEII LEPFETIADG IILHFSHGHH LTLEISRVYD ENKFCQACIL 401: PIYEGNYYSC MDDCDFILHE ACANASRKKH HALHGHPLTL KIVPGEQEYY KDYFQCSACY RQSCGYVYEA GYYRIDLRCA SVSEPFQYQG HEHPLFLALD 501: RQQELEATCQ ICQQKATFLR KLNCIECDYV ICFKCATLPY EAKYKHDKHF LTFREGKEES DQLDWCEVCE KRIVYSRKDG FYACDHCCTT LHVHCLLGED 601: MYMLKPSQTI TYIKREVHIL PNNTRSRPFC HHHDEDRCPH KVVFKWQDQY TIFCSYRCLT K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)