AT2G13770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5736603..5737847 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39166.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.05 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFNYGSLSY IPSSFSSSSS SDNNYYDDIE KQVVSQITTN NNFLCSQHLY NSEGSHGGSI HGHVVINRDR ENVARNLFID YFAEKPVFPE TMFRRRFRMS 101: RSLFLRIYDA IKRHDNYFVQ RRDGVGKLGL SGLQKMTAAF RMLAYGVPAD STDEYIKIGE STALESLKRF CRAIVEVFAC CYLRSPDAND VARLLHIGES 201: RGFPAEGTAP PASYVINGKP YNMGYYLADG IYPKWSTLVQ TIHDPRGPKK KLFAMKQEAC RKDVERAFGV LQLRFAIVAG PSRLWNKTVL HDIMTSCIIM 301: HNMIIEDERD IDAPIEERVE VPIEEVEMTG DDDTRFQEFL ARH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)